Publications

IsoGenie Publications

See the IsoGenie Database website for the most up-to-date list.

2021

  • Wilson, R. M., Zayed, A. A., Crossen, K. B., Woodcroft, B., Tfaily, M. M., Emerson, J., Raab, N., Hodgkins, S. B., Verbeke, B., Tyson, G., Crill, P., Saleska, S., Chanton, J. P., Rich, V. I., IsoGenie Project Coordinators, & IsoGenie Project Field Team. (2021). Functional capacities of microbial communities to carry out large scale geochemical processes are maintained during ex situ anaerobic incubation. PLOS ONE, 16(2), e0245857. https://doi.org/10.1371/journal.pone.0245857
  • Zinke, L. A., Evans, P. N., Santos‐Medellín, C., Schroeder, A. L., Parks, D. H., Varner, R. K., Rich, V. I., Tyson, G. W., & Emerson, J. B. (2021). Evidence for non‐methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales. Environmental Microbiology, 23(1), 340–357. https://doi.org/10.1111/1462-2920.15316

2020

  • AminiTabrizi, R., Wilson, R. M., Fudyma, J. D., Hodgkins, S. B., Heyman, H. M., Rich, V. I., Saleska, S. R., Chanton, J. P., & Tfaily, M. M. (2020). Controls on soil organic matter degradation and subsequent greenhouse gas emissions across a permafrost thaw gradient in northern Sweden. Frontiers in Earth Science, 8, 557961. https://doi.org/10.3389/feart.2020.557961
  • Bolduc, B., Hodgkins, S. B., Varner, R. K., Crill, P. M., McCalley, C. K., Chanton, J. P., Tyson, G. W., Riley, W. J., Palace, M., Duhaime, M. B., Hough, M. A., IsoGenie Project Coordinators, IsoGenie Project Team, A2A Project Team, Saleska, S. R., Sullivan, M. B., & Rich, V. I. (2020). The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental researchPeerJ8, e9467. https://doi.org/10.7717/peerj.9467
  • Boyd, J. A. (2020, May 25). Development of meta omic tools to explore microbial carbon cycling (PhD Thesis). The University of Queensland, Brisbane, QLD, Australia. https://doi.org/10.14264/uql.2020.747
  • Burke, S. (2020, May 1). Investigating the spatial and temporal scale variability of ebullitive flux from a subarctic thaw pond system (PhD Dissertation). University of New Hampshire, Durham, NH. Retrieved from https://scholars.unh.edu/dissertation/2499
  • Chang, K.-Y., Riley, W. J., Crill, P. M., Grant, R. F., & Saleska, S. R. (2020). Hysteretic temperature sensitivity of wetland CH4 fluxes explained by substrate availability and microbial activity. Biogeosciences, 17(22), 5849–5860. https://doi.org/10.5194/bg-17-5849-2020
  • Cooper, W. T., Chanton, J. C., D’Andrilli, J., Hodgkins, S. B., Podgorski, D. C., Stenson, A. C., Tfaily, M. M., & Wilson, R. M. (2020). A history of molecular level analysis of natural organic matter by FTICR mass spectrometry and the paradigm shift in organic geochemistry. Mass Spectrometry Reviews, mas.21663. https://doi.org/10.1002/mas.21663
  • Emerson, J. B., Varner, R. K., Wik, M., Parks, D. H., Neumann, R. B., Johnson, J. E., Singleton, C. M., Woodcroft, B. J., Tollerson, R., Owusu-Dommey, A., Binder, M., Freitas, N. L., Crill, P. M., Saleska, S. R., Tyson, G. W., & Rich, V. I. (2020). Diverse Arctic lake sediment microbiota shape methane emission temperature sensitivity. BioRxiv, preprint, 2020.02.08.934661. https://doi.org/10.1101/2020.02.08.934661
  • Hough, M., McClure, A., Bolduc, B., Dorrepaal, E., Saleska, S., Klepac-Ceraj,
    V., & Rich, V. (2020). Biotic and environmental drivers of plant microbiomes across a permafrost
    thaw gradient
    . Frontiers in Microbiology, 11, 796. https://doi.org/10.3389/fmicb.2020.00796
  • Hough, M. A. (2020). Tracing the new carbon cycle from plant inputs to microbial outputs across an arctic permafrost thaw gradient (PhD Dissertation). University of Arizona, Tucson, AZ. Retrieved from https://repository.arizona.edu/handle/10150/641681
  • Perryman, C. R., McCalley, C. K., Malhotra, A., Fahnestock, M. F., Kashi, N. N., Bryce, J. G., Giesler, R., & Varner, R. K. (2020). Thaw transitions and redox conditions drive methane oxidation in a permafrost peatland. Journal of Geophysical Research: Biogeosciences, 125(3), e2019JG005526. https://doi.org/10.1029/2019JG005526
  • Wik, M., Thornton, B. F., Varner, R. K., McCalley, C., & Crill, P. M. (2020). Stable methane isotopologues from northern lakes suggest that ebullition is dominated by sub‐lake scale processes. Journal of Geophysical Research: Biogeosciences, 125(10). https://doi.org/10.1029/2019JG005601

2019

  • Abs, E., Saleska, S. R., & Ferriere, R. (2019). Microbial evolution reshapes soil carbon feedbacks to climate change. BioRxiv, preprint, 641399. https://doi.org/10.1101/641399
  • Boyd, J. A., Jungbluth, S. P., Leu, A. O., Evans, P. N., Woodcroft, B. J., Chadwick, G. L., Orphan, V. J., Amend, J. P., Rappé, M. S., & Tyson, G. W. (2019). Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi. The ISME Journal, 13(5), 1269–1279. https://doi.org/10.1038/s41396-018-0343-2
  • Burke, S. A., Wik, M., Lang, A., Contosta, A. R., Palace, M., Crill, P. M., & Varner, R. K. (2019). Long term measurements of methane ebullition from thaw ponds. Journal of Geophysical Research: Biogeosciences, 124. https://doi.org/10.1029/2018JG004786
  • Cavicchioli, R., Ripple, W. J., Timmis, K. N., Azam, F., Bakken, L. R., Baylis, M., Behrenfeld, M. J., Boetius, A., Boyd, P. W., Classen, A. T., Crowther, T. W., Danovaro, R., Foreman, C. M., Huisman, J., Hutchins, D. A., Jansson, J. K., Karl, D. M., Koskella, B., Mark Welch, D. B., Martiny, J. B. H., Moran, M. A., Orphan, V. J., Reay, D. S., Remais, J. V., Rich, V. I., Singh, B. K., Stein, L. Y., Stewart, F. J., Sullivan, M. B., van Oppen, M. J. H., Weaver, S. C., Webb, E. A., & Webster, N. S. (2019). Scientists’ warning to humanity: microorganisms and climate change. Nature Reviews Microbiology, 17(9), 569–586. https://doi.org/10.1038/s41579-019-0222-5
  • Chang, K., Riley, W. J., Brodie, E. L., McCalley, C. K., Crill, P. M., & Grant, R. F. (2019). Methane production pathway regulated proximally by substrate availability and distally by temperature in a high‐latitude mire complex. Journal of Geophysical Research: Biogeosciences, 124(10), 3057–3074. https://doi.org/10.1029/2019JG005355
  • Chang, K.-Y., Riley, W. J., Crill, P. M., Grant, R. F., Rich, V. I., & Saleska, S. R. (2019). Large carbon cycle sensitivities to climate across a permafrost thaw gradient in subarctic Sweden. The Cryosphere, 13, 647–663. https://doi.org/10.5194/tc-13-647-2019
  • Evans, P. N., Boyd, J. A., Leu, A. O., Woodcroft, B. J., Parks, D. H., Hugenholtz, P., & Tyson, G. W. (2019). An evolving view of methane metabolism in the Archaea. Nature Reviews Microbiology, 17(4), 219–232. https://doi.org/10.1038/s41579-018-0136-7
  • Fahnestock, M. F., Bryce, J. G., McCalley, C. K., Montesdeoca, M., Bai, S., Li, Y., Driscoll, C. T., Crill, P. M., Rich, V. I., & Varner, R. K. (2019). Mercury reallocation in thawing subarctic peatlands. Geochemical Perspectives Letters, 11, 33–38. https://doi.org/10.7185/geochemlet.1922
  • Martinez, M. A., Woodcroft, B. J., Ignacio Espinoza, J. C., Zayed, A. A., Singleton, C. M., Boyd, J. A., Li, Y.-F., Purvine, S., Maughan, H., Hodgkins, S. B., Anderson, D., Sederholm, M., Temperton, B., Bolduc, B., IsoGenie Project Coordinators, Saleska, S. R., Tyson, G. W., & Rich, V. I. (2019). Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov. Systematic and Applied Microbiology, 42(1), 54–66. https://doi.org/10.1016/j.syapm.2018.12.003
  • Priyam, A., Woodcroft, B. J., Rai, V., Moghul, I., Munagala, A., Ter, F., Chowdhary, H., Pieniak, I., Maynard, L. J., Gibbins, M. A., Moon, H., Davis-Richardson, A., Uludag, M., Watson-Haigh, N. S., Challis, R., Nakamura, H., Favreau, E., Gómez, E. A., Pluskal, T., Leonard, G., Rumpf, W., & Wurm, Y. (2019). Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases. Molecular Biology and Evolution, 36(12), 2922–2924. https://doi.org/10.1093/molbev/msz185
  • Roux, S., Trubl, G., Goudeau, D., Nath, N., Couradeau, E., Ahlgren, N. A., Zhan, Y., Marsan, D., Chen, F., Fuhrman, J. A., Northen, T. R., Sullivan, M. B., Rich, V. I., Malmstrom, R. R., & Eloe-Fadrosh, E. A. (2019). Optimizing de novo genome assembly from PCR-amplified metagenomes. PeerJ, 7, e6902. https://doi.org/10.7717/peerj.6902
  • Tfaily, M. M., Wilson, R. M., Brewer, H. M., Chu, R. K., Heyman, H. M., Hoyt, D. W., Kyle, J. E., & Purvine, S. O. (2019). Single-throughput complementary high-resolution analytical techniques for characterizing complex natural organic matter mixtures. Journal of Visualized Experiments, (143). https://doi.org/10.3791/59035
  • Trubl, G., Roux, S., Solonenko, N., Li, Y.-F., Bolduc, B., Rodríguez-Ramos, J., Eloe-Fadrosh, E. A., Rich, V. I., & Sullivan, M. B. (2019). Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils. PeerJ, 7, e7265. https://doi.org/10.7717/peerj.7265
  • Wilson, R. M., Neumann, R. B., Crossen, K. B., Raab, N. M., Hodgkins, S. B., Saleska, S. R., Bolduc, B., Woodcroft, B. J., Tyson, G. W., Chanton, J. P., & Rich, V. I. (2019). Microbial community analyses inform geochemical reaction network models for predicting pathways of greenhouse gas production. Frontiers in Earth Science, 7, 59. https://doi.org/10.3389/feart.2019.00059

2018

  • Boyd, J. A., Woodcroft, B. J., & Tyson, G. W. (2018). GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes. Nucleic Acids Research, 46(10), e59. https://doi.org/10.1093/nar/gky174
  • Emerson, J. B., Roux, S., Brum, J. R., Bolduc, B., Woodcroft, B. J., Jang, H. B., Singleton, C. M., Solden, L. M., Naas, A. E., Boyd, J. A., Hodgkins, S. B., Wilson, R. M., Trubl, G., Li, C., Frolking, S., Pope, P. B., Wrighton, K. C., Crill, P. M., Chanton, J. P., Saleska, S. R., Tyson, G. W., Rich, V. I., & Sullivan, M. B. (2018). Host-linked soil viral ecology along a permafrost thaw gradient. Nature Microbiology, 3(8), 870–880. https://doi.org/10.1038/s41564-018-0190-y
  • Hodgkins, S. B., Richardson, C. J., Dommain, R., Wang, H., Glaser, P. H., Verbeke, B., Winkler, B. R., Cobb, A. R., Rich, V. I., Missilmani, M., Flanagan, N., Ho, M., Hoyt, A. M., Harvey, C. F., Vining, S. R., Hough, M. A., Moore, T. R., Richard, P. J. H., De La Cruz, F. B., Toufaily, J., Hamdan, R., Cooper, W. T., & Chanton, J. P. (2018). Tropical peatland carbon storage linked to global latitudinal trends in peat recalcitrance. Nature Communications, 9(1), 3640. https://doi.org/10.1038/s41467-018-06050-2
  • Singleton, C. M., McCalley, C. K., Woodcroft, B. J., Boyd, J. A., Evans, P. N., Hodgkins, S. B., Chanton, J. P., Frolking, S., Crill, P. M., Saleska, S. R., Rich, V. I., & Tyson, G. W. (2018). Methanotrophy across a natural permafrost thaw environment. The ISME Journal, 12, 2544–2558. https://doi.org/10.1038/s41396-018-0065-5
  • Trubl, G., Jang, H. B., Roux, S., Emerson, J. B., Solonenko, N., Vik, D. R., Solden, L., Ellenbogen, J., Runyon, A. T., Bolduc, B., Woodcroft, B. J., Saleska, S. R., Tyson, G. W., Wrighton, K. C., Sullivan, M. B., & Rich, V. I. (2018). Soil viruses are underexplored players in ecosystem carbon processing. MSystems, 3(5), e00076-18. https://doi.org/10.1128/mSystems.00076-18
  • Walter Anthony, K., Schneider von Deimling, T., Nitze, I., Frolking, S., Emond, A., Daanen, R., Anthony, P., Lindgren, P., Jones, B., & Grosse, G. (2018). 21st-century modeled permafrost carbon emissions accelerated by abrupt thaw beneath lakes. Nature Communications, 9(1), 3262. https://doi.org/10.1038/s41467-018-05738-9
  • Wik, M., Johnson, J. E., Crill, P. M., DeStasio, J. P., Erickson, L., Halloran, M. J., Fahnestock, M. F., Crawford, M. K., Phillips, S. C., & Varner, R. K. (2018). Sediment characteristics and methane ebullition in three subarctic lakes. Journal of Geophysical Research: Biogeosciences, 123(8), 2399–2411. https://doi.org/10.1029/2017JG004298
  • Wilson, R. M., & Tfaily, M. M. (2018). Advanced molecular techniques provide new rigorous tools for characterizing organic matter quality in complex systems. Journal of Geophysical Research: Biogeosciences, 123(6), 1790–1795. https://doi.org/10.1029/2018JG004525
  • Woodcroft, B. J., Singleton, C. M., Boyd, J. A., Evans, P. N., Emerson, J. B., Zayed, A. A. F., Hoelzle, R. D., Lamberton, T. O., McCalley, C. K., Hodgkins, S. B., Wilson, R. M., Purvine, S. O., Nicora, C. D., Li, C., Frolking, S., Chanton, J. P., Crill, P. M., Saleska, S. R., Rich, V. I., & Tyson, G. W. (2018). Genome-centric view of carbon processing in thawing permafrost. Nature, 560(7716), 49–54. https://doi.org/10.1038/s41586-018-0338-1

2017

  • Bolduc, B., Youens-Clark, K., Roux, S., Hurwitz, B. L., & Sullivan, M. B. (2017). iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure. The ISME Journal, 11(1), 7–14. https://doi.org/10.1038/ismej.2016.89
  • Bolduc, B., Jang, H. B., Doulcier, G., You, Z.-Q., Roux, S., & Sullivan, M. B. (2017). vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria. PeerJ, 5, e3243. https://doi.org/10.7717/peerj.3243
  • Deng, J., McCalley, C. K., Frolking, S., Chanton, J., Crill, P., Varner, R., Tyson, G., Rich, V., Hines, M., Saleska, S. R., & Li, C. (2017). Adding stable carbon isotopes improves model representation of the role of microbial communities in peatland methane cycling. Journal of Advances in Modeling Earth Systems, 9(2), 1412–1430. https://doi.org/10.1002/2016MS000817
  • Martinez-Hernandez, F., Fornas, O., Lluesma Gomez, M., Bolduc, B., de la Cruz Peña, M. J., Martínez, J. M., Anton, J., Gasol, J. M., Rosselli, R., Rodriguez-Valera, F., Sullivan, M. B., Acinas, S. G., & Martinez-Garcia, M. (2017). Single-virus genomics reveals hidden cosmopolitan and abundant viruses. Nature Communications, 8(1), 15892. https://doi.org/10.1038/ncomms15892
  • Mondav, R., McCalley, C. K., Hodgkins, S. B., Frolking, S., Saleska, S. R., Rich, V. I., Chanton, J. P., & Crill, P. M. (2017). Microbial network, phylogenetic diversity and community membership in the active layer across a permafrost thaw gradient. Environmental Microbiology, 19(8), 3201–3218. https://doi.org/10.1111/1462-2920.13809
  • Parks, D. H., Rinke, C., Chuvochina, M., Chaumeil, P.-A., Woodcroft, B. J., Evans, P. N., Hugenholtz, P., & Tyson, G. W. (2017). Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. Nature Microbiology, 2(11), 1533–1542. https://doi.org/10.1038/s41564-017-0012-7
  • Roux, S., Emerson, J. B., Eloe-Fadrosh, E. A., & Sullivan, M. B. (2017). Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity. PeerJ, 5, e3817. https://doi.org/10.7717/peerj.3817
  • Vining, S. R. (2017). Shifts in Arctic vegetation may fuel feedbacks to climate change in peatland regions (Honors Thesis). The University of Arizona, Tucson, AZ. Retrieved from https://hdl.handle.net/10150/625232
  • Wilson, R. M., Fitzhugh, L., Whiting, G. J., Frolking, S., Harrison, M. D., Dimova, N., Burnett, W. C., & Chanton, J. P. (2017). Greenhouse gas balance over thaw-freeze cycles in discontinuous zone permafrost. Journal of Geophysical Research: Biogeosciences, 122(2), 387–404. https://doi.org/10.1002/2016JG003600
  • Wilson, Rachel M., Tfaily, M. M., Rich, V. I., Keller, J. K., Bridgham, S. D., Zalman, C. M., Meredith, L., Hanson, P. J., Hines, M., Pfeifer-Meister, L., Saleska, S. R., Crill, P., Cooper, W. T., Chanton, J. P., & Kostka, J. E. (2017). Hydrogenation of organic matter as a terminal electron sink sustains high CO2:CH4 production ratios during anaerobic decomposition. Organic Geochemistry, 112, 22–32. https://doi.org/10.1016/j.orggeochem.2017.06.011

2016

  • Anthony, K. W., Daanen, R., Anthony, P., Schneider von Deimling, T., Ping, C.-L., Chanton, J. P., & Grosse, G. (2016). Methane emissions proportional to permafrost carbon thawed in Arctic lakes since the 1950s. Nature Geoscience, 9(9), 679–682. https://doi.org/10.1038/ngeo2795
  • Hodgkins, S. B. (2016). Changes in organic matter chemistry and methanogenesis due to permafrost thaw in a subarctic peatland (Dissertation). The Florida State University, Tallahassee, FL. Retrieved from https://purl.flvc.org/fsu/fd/FSU_2016SP_Hodgkins_fsu_0071E_13057
  • Hodgkins, S. B., Tfaily, M. M., Podgorski, D. C., McCalley, C. K., Saleska, S. R., Crill, P. M., Rich, V. I., Chanton, J. P., & Cooper, W. T. (2016). Elemental composition and optical properties reveal changes in dissolved organic matter along a permafrost thaw chronosequence in a subarctic peatland. Geochimica et Cosmochimica Acta, 187, 123–140. https://doi.org/10.1016/j.gca.2016.05.015
  • Mackelprang, R., Saleska, S. R., Jacobsen, C. S., Jansson, J. K., & Taş, N. (2016). Permafrost meta-omics and climate change. Annual Review of Earth and Planetary Sciences, 44(1), 439–462. https://doi.org/10.1146/annurev-earth-060614-105126
  • Rinke, C., Low, S., Woodcroft, B. J., Raina, J.-B., Skarshewski, A., Le, X. H., Butler, M. K., Stocker, R., Seymour, J., Tyson, G. W., & Hugenholtz, P. (2016). Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics. PeerJ, 4, e2486. https://doi.org/10.7717/peerj.2486
  • Trubl, G., Solonenko, N., Chittick, L., Solonenko, S. A., Rich, V. I., & Sullivan, M. B. (2016). Optimization of viral resuspension methods for carbon-rich soils along a permafrost thaw gradient. PeerJ, 4, e1999. https://doi.org/10.7717/peerj.1999
  • Woodcroft, B. J., Boyd, J. A., & Tyson, G. W. (2016). OrfM: a fast open reading frame predictor for metagenomic data. Bioinformatics, 32(17), 2702–2703. https://doi.org/10.1093/bioinformatics/btw241

2015

  • Deng, J., Li, C., & Frolking, S. (2015). Modeling impacts of changes in temperature and water table on C gas fluxes in an Alaskan peatland: Modeling C Gas Fluxes in Peatland. Journal of Geophysical Research: Biogeosciences, 120(7), 1279–1295. https://doi.org/10.1002/2014JG002880
  • Hodgkins, S. B., Chanton, J. P., Langford, L. C., McCalley, C. K., Saleska, S. R., Rich, V. I., Crill, P. M., & Cooper, W. T. (2015). Soil incubations reproduce field methane dynamics in a subarctic wetland. Biogeochemistry, 126(1), 241–249. https://doi.org/10.1007/s10533-015-0142-z
  • Kao-Kniffin, J., Woodcroft, B. J., Carver, S. M., Bockheim, J. G., Handelsman, J., Tyson, G. W., Hinkel, K. M., & Mueller, C. W. (2015). Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska. Scientific Reports, 5(1), 18165. https://doi.org/10.1038/srep18165
  • Tfaily, M. M., Corbett, J. E., Wilson, R., Chanton, J. P., Glaser, P. H., Cawley, K. M., Jaffé, R., & Cooper, W. T. (2015). Utilization of PARAFAC-modeled excitation-emission matrix (EEM) fluorescence spectroscopy to identify biogeochemical processing of dissolved organic matter in a Northern peatland. Photochemistry and Photobiology, 91(3), 684–695. https://doi.org/10.1111/php.12448

2014

  • Anthony, K. M. W., Zimov, S. A., Grosse, G., Jones, M. C., Anthony, P. M., Iii, F. S. C., Finlay, J. C., Mack, M. C., Davydov, S., Frenzel, P., & Frolking, S. (2014). A shift of thermokarst lakes from carbon sources to sinks during the Holocene epoch. Nature, 511(7510), 452–456. https://doi.org/10.1038/nature13560
  • Deng, J., Li, C., Frolking, S., Zhang, Y., Bäckstrand, K., & Crill, P. (2014). Assessing effects of permafrost thaw on C fluxes based on multiyear modeling across a permafrost thaw gradient at Stordalen, Sweden. Biogeosciences, 11(17), 4753–4770. https://doi.org/10.5194/bg-11-4753-2014
  • Frolking, S., Talbot, J., & Subin, Z. M. (2014). Exploring the relationship between peatland net carbon balance and apparent carbon accumulation rate at century to millennial time scales. The Holocene, 24(9), 1167–1173. https://doi.org/10.1177/0959683614538078
  • Hodgkins, S. B., Tfaily, M. M., McCalley, C. K., Logan, T. A., Crill, P. M., Saleska, S. R., Rich, V. I., & Chanton, J. P. (2014). Changes in peat chemistry associated with permafrost thaw increase greenhouse gas production. Proceedings of the National Academy of Sciences of the United States of America, 111(16), 5819–5824. https://doi.org/10.1073/pnas.1314641111
  • McCalley, C. K., Woodcroft, B. J., Hodgkins, S. B., Wehr, R. A., Kim, E.-H., Mondav, R., Crill, P. M., Chanton, J. P., Rich, V. I., Tyson, G. W., & Saleska, S. R. (2014). Methane dynamics regulated by microbial community response to permafrost thaw. Nature, 514(7523), 478–481. https://doi.org/10.1038/nature13798
  • Mondav, R., Woodcroft, B. J., Kim, E.-H., McCalley, C. K., Hodgkins, S. B., Crill, P. M., Chanton, J., Hurst, G. B., VerBerkmoes, N. C., Saleska, S. R., Hugenholtz, P., Rich, V. I., & Tyson, G. W. (2014). Discovery of a novel methanogen prevalent in thawing permafrost. Nature Communications, 5, 3212. https://doi.org/10.1038/ncomms4212

Non-IsoGenie Publications on Stordalen Mire and Other IsoGenie-Related Topics

2020

  • Thanh Duc, N., Silverstein, S., Wik, M., Crill, P., Bastviken, D., & Varner, R. K. (2020). Technical note: Greenhouse gas flux studies: an automated online system for gas emission measurements in aquatic environments. Hydrology and Earth System Sciences, 24(7), 3417–3430. https://doi.org/10.5194/hess-24-3417-2020

2018

2017

2016

  • Paez-Espino, D., Chen, I-M A., Palaniappan, K.,  Ratner, A., Chu, K., Szeto, E., Pillay, M., Huang, J., Markowitz, V.M., Nielsen, T., Huntemann, M., Reddy, T.B.K., Pavlopoulos, G.A., Sullivan, M.B., Campbell, B.J., Chen, F., McMahon, K., Hallam, S.J., Denef, V., Cavicchioli, R., Caffrey, S.M., Streit, W.R., Webster, J., Handley, K., Salekdeh, G.H., Tsesmetzis, N., Setubal, J.C., PopeP.B., Liu, W-T., Rivers, A.R., Ivanova, N.N. & Kyrpides, N.C. (2016). IMG/VR: A database of cultured and uncultured DNA Viruses 1 and Retroviruses. Nucleic Acids Research, 45, D457-D465.

2015

  • Tang, J., Miller, P. A., Crill, P. M., Olin, S., & Pilesjö, P. (2015). Investigating the influence of two different flow routing algorithms on soil-water-vegetation interactions using the dynamic ecosystem model LPJ-GUESS. Ecohydrology, 8(4), 570-583. doi: 10.1002/eco.1526
  • Thornton, B. F., Wik, M., & Crill, P. M. (2015). Climate-forced changes in available energy and methane bubbling from subarctic lakes. Geophys. Res. Lett., 42, 1936–1942. doi: 10.1002/2015GL063189.
  • Waddington, J. M., Morris, P. J., Kettridge, N., Granath, G., Thompson, D. K., & Moore, P. A. (2015). Hydrological feedbacks in northern peatlands. Ecohydrology, 8(1), 113–127. doi: 10.1002/eco.1493

2014

  • Walter Anthony, K. M., Zimov, S. A., Grosse, G., Jones, M. C., Anthony, P. M., Chapin III, F. S., Finlay, J. C., Mack, M. C., Davydod, S., Frenzel, P., & Frolking, S. (2014). A shift of thermokarst lakes from carbon sources to sinks during the Holocene epoch. Nature, 511, 452-456. doi:10.1038/nature13560

2013

  • Olefeldt, D., Turetsky, M. R., Crill, P. M., & McGuire, A. D. (2013). Environmental and physical controls on northern terrestrial methane emissions across permafrost zones. Global Change Biology, 19(2), 589-603. doi: 10.1111/gcb.12071

2011

  • Wik, M., Crill, P. M., Bastviken, D., Danielsson, Å., & Norbäck, E. (2011). Bubbles trapped in arctic lake ice: Potential implications for methane emissions, J. Geophys. Res., 116, G03044. doi: 10.1029/2011JG001761.
  • Thornton, B. F., Wik, M., & Crill, P. M. (2015), Climate-forced changes in available energy and methane bubbling from subarctic lakes. Geophys. Res. Lett., 42, 1936–1942. doi: 10.1002/2015GL063189.

2010

  • Jackowicz-Korczyński, M., Christensen, T. R., Bäckstrand, K., Crill, P., Friborg, T., Mastepanov, M., & Ström, L. (2010). Annual cycle of methane emission from a subarctic peatland, J. Geophys. Res., 115, G02009. doi: 10.1029/2008JG000913.
  • Bäckstrand, K., Crill, P.M., Jackowicz-Korczyński, M., Mastepanov, M., Christensen, T. R., & Bastviken, D. (2010). Annual carbon gas budget for a subarctic peatland, Northern Sweden. Biogeosciences, 7, 95-108.

2008

  • Bäckstrand, K., Crill, P. M., Mastepanov, M., Christensen, T. R., & Bastviken, D. (2008). Total hydrocarbon flux dynamics at a subarctic mire in northern Sweden, J. Geophys. Res., 113, G03026. doi: 10.1029/2008JG000703.

2006

  • Johansson, T., Malmer, N., Crill, P. M., Friborg T., Åkerman, J. H., Mastepanov, M., & Christensen, T. R. (2006). Decadal vegetation changes in a northern peatland, greenhouse gas fluxes and net radiative forcing. Global Change Biology, 12: 2352–2369. doi: 10.1111/j.1365-2486.2006.01267.x

2005

  • Malmer, N., Johansson, T., Olsrud, M., & Christensen, T. R. (2005). Vegetation, climatic changes and net carbon sequestration in a North-Scandinavian subarctic mire over 30 years. Global Change Biology, 11: 1895–1909. doi: 10.1111/j.1365-2486.2005.01042.x

2004

  • Dorrepaal, E., Aerts, R., Cornelissen, J. C., Callaghan, T. V., & Van Logtestijn, R. P. (2004). Summer warming and increased winter snow cover affect Sphagnum fuscum growth, structure and production in a sub-arctic bog. Global Change Biology, 10(1), 93-104. doi:10.1111/j.1365-2486.2003.00718.x
  • Aerts, R., Cornelissen, J. C., Dorrepaal, E., van Logtestijn, R. P., & Callaghan, T. V. (2004). Effects of experimentally imposed climate scenarios on flowering phenology and flower production of subarctic bog species. Global Change Biology, 10(9), 1599-1609. doi:10.1111/j.1365-2486.2004.00815.x

1999

  • Svensson, B. H., Christensen, T. R., Johansson, E., & Öquist, M. (1999). Interdecadal changes in CO 2 and CH 4 fluxes of a subarctic mire: Stordalen revisited after 20 years. Oikos, 84(1), 22-30.

1984

  • Svensson, B.H. &Rosswall;, T. (1984). In situ methane production from acid peat in plant communities with different moisture regimes in a subarctic mire. Oikos, 43(3), 341-350.

1980

  • Svensson, B. H. (1980). Carbon dioxide and methane fluxes from the ombrotrophic parts of a subarctic mire. Ecological Bulletins, 30, 235-250.
  • Svensson, B. H. & Rosswall, T. (1980). Energy flow through the subarctic mire at Stordalen. Ecological Bulletins, 30, 283-307.