Publications – IsoGenie

IsoGenie Publications

See the IsoGenie Database website for the most up-to-date list.

2021

Wilson, R. M., Zayed, A. A., Crossen, K. B., Woodcroft, B., Tfaily, M. M., Emerson, J., Raab, N., Hodgkins, S. B., Verbeke, B., Tyson, G., Crill, P., Saleska, S., Chanton, J. P., Rich, V. I., IsoGenie Project Coordinators, & IsoGenie Project Field Team. (2021). Functional capacities of microbial communities to carry out large scale geochemical processes are maintained during ex situ anaerobic incubation. PLOS ONE, 16(2), e0245857. https://doi.org/10.1371/journal.pone.0245857
Zinke, L. A., Evans, P. N., Santos‐Medellín, C., Schroeder, A. L., Parks, D. H., Varner, R. K., Rich, V. I., Tyson, G. W., & Emerson, J. B. (2021). Evidence for non‐methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales. Environmental Microbiology, 23(1), 340–357. https://doi.org/10.1111/1462-2920.15316

2020

AminiTabrizi, R., Wilson, R. M., Fudyma, J. D., Hodgkins, S. B., Heyman, H. M., Rich, V. I., Saleska, S. R., Chanton, J. P., & Tfaily, M. M. (2020). Controls on soil organic matter degradation and subsequent greenhouse gas emissions across a permafrost thaw gradient in northern Sweden. Frontiers in Earth Science, 8, 557961. https://doi.org/10.3389/feart.2020.557961
Bolduc, B., Hodgkins, S. B., Varner, R. K., Crill, P. M., McCalley, C. K., Chanton, J. P., Tyson, G. W., Riley, W. J., Palace, M., Duhaime, M. B., Hough, M. A., IsoGenie Project Coordinators, IsoGenie Project Team, A2A Project Team, Saleska, S. R., Sullivan, M. B., & Rich, V. I. (2020). The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research. PeerJ, 8, e9467. https://doi.org/10.7717/peerj.9467
Boyd, J. A. (2020, May 25). Development of meta omic tools to explore microbial carbon cycling (PhD Thesis). The University of Queensland, Brisbane, QLD, Australia. https://doi.org/10.14264/uql.2020.747
Burke, S. (2020, May 1). Investigating the spatial and temporal scale variability of ebullitive flux from a subarctic thaw pond system (PhD Dissertation). University of New Hampshire, Durham, NH. Retrieved from https://scholars.unh.edu/dissertation/2499
Chang, K.-Y., Riley, W. J., Crill, P. M., Grant, R. F., & Saleska, S. R. (2020). Hysteretic temperature sensitivity of wetland CH₄ fluxes explained by substrate availability and microbial activity. Biogeosciences, 17(22), 5849–5860. https://doi.org/10.5194/bg-17-5849-2020
Cooper, W. T., Chanton, J. C., D’Andrilli, J., Hodgkins, S. B., Podgorski, D. C., Stenson, A. C., Tfaily, M. M., & Wilson, R. M. (2020). A history of molecular level analysis of natural organic matter by FTICR mass spectrometry and the paradigm shift in organic geochemistry. Mass Spectrometry Reviews, mas.21663. https://doi.org/10.1002/mas.21663
Emerson, J. B., Varner, R. K., Wik, M., Parks, D. H., Neumann, R. B., Johnson, J. E., Singleton, C. M., Woodcroft, B. J., Tollerson, R., Owusu-Dommey, A., Binder, M., Freitas, N. L., Crill, P. M., Saleska, S. R., Tyson, G. W., & Rich, V. I. (2020). Diverse Arctic lake sediment microbiota shape methane emission temperature sensitivity. BioRxiv, preprint, 2020.02.08.934661. https://doi.org/10.1101/2020.02.08.934661
Hough, M., McClure, A., Bolduc, B., Dorrepaal, E., Saleska, S., Klepac-Ceraj,
V., & Rich, V. (2020). Biotic and environmental drivers of plant microbiomes across a permafrost
thaw gradient. Frontiers in Microbiology, 11, 796. https://doi.org/10.3389/fmicb.2020.00796
Hough, M. A. (2020). Tracing the new carbon cycle from plant inputs to microbial outputs across an arctic permafrost thaw gradient (PhD Dissertation). University of Arizona, Tucson, AZ. Retrieved from https://repository.arizona.edu/handle/10150/641681
Perryman, C. R., McCalley, C. K., Malhotra, A., Fahnestock, M. F., Kashi, N. N., Bryce, J. G., Giesler, R., & Varner, R. K. (2020). Thaw transitions and redox conditions drive methane oxidation in a permafrost peatland. Journal of Geophysical Research: Biogeosciences, 125(3), e2019JG005526. https://doi.org/10.1029/2019JG005526
Wik, M., Thornton, B. F., Varner, R. K., McCalley, C., & Crill, P. M. (2020). Stable methane isotopologues from northern lakes suggest that ebullition is dominated by sub‐lake scale processes. Journal of Geophysical Research: Biogeosciences, 125(10). https://doi.org/10.1029/2019JG005601

2019

Abs, E., Saleska, S. R., & Ferriere, R. (2019). Microbial evolution reshapes soil carbon feedbacks to climate change. BioRxiv, preprint, 641399. https://doi.org/10.1101/641399
Boyd, J. A., Jungbluth, S. P., Leu, A. O., Evans, P. N., Woodcroft, B. J., Chadwick, G. L., Orphan, V. J., Amend, J. P., Rappé, M. S., & Tyson, G. W. (2019). Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi. The ISME Journal, 13(5), 1269–1279. https://doi.org/10.1038/s41396-018-0343-2
Burke, S. A., Wik, M., Lang, A., Contosta, A. R., Palace, M., Crill, P. M., & Varner, R. K. (2019). Long term measurements of methane ebullition from thaw ponds. Journal of Geophysical Research: Biogeosciences, 124. https://doi.org/10.1029/2018JG004786
Cavicchioli, R., Ripple, W. J., Timmis, K. N., Azam, F., Bakken, L. R., Baylis, M., Behrenfeld, M. J., Boetius, A., Boyd, P. W., Classen, A. T., Crowther, T. W., Danovaro, R., Foreman, C. M., Huisman, J., Hutchins, D. A., Jansson, J. K., Karl, D. M., Koskella, B., Mark Welch, D. B., Martiny, J. B. H., Moran, M. A., Orphan, V. J., Reay, D. S., Remais, J. V., Rich, V. I., Singh, B. K., Stein, L. Y., Stewart, F. J., Sullivan, M. B., van Oppen, M. J. H., Weaver, S. C., Webb, E. A., & Webster, N. S. (2019). Scientists’ warning to humanity: microorganisms and climate change. Nature Reviews Microbiology, 17(9), 569–586. https://doi.org/10.1038/s41579-019-0222-5
Chang, K., Riley, W. J., Brodie, E. L., McCalley, C. K., Crill, P. M., & Grant, R. F. (2019). Methane production pathway regulated proximally by substrate availability and distally by temperature in a high‐latitude mire complex. Journal of Geophysical Research: Biogeosciences, 124(10), 3057–3074. https://doi.org/10.1029/2019JG005355
Chang, K.-Y., Riley, W. J., Crill, P. M., Grant, R. F., Rich, V. I., & Saleska, S. R. (2019). Large carbon cycle sensitivities to climate across a permafrost thaw gradient in subarctic Sweden. The Cryosphere, 13, 647–663. https://doi.org/10.5194/tc-13-647-2019
Evans, P. N., Boyd, J. A., Leu, A. O., Woodcroft, B. J., Parks, D. H., Hugenholtz, P., & Tyson, G. W. (2019). An evolving view of methane metabolism in the Archaea. Nature Reviews Microbiology, 17(4), 219–232. https://doi.org/10.1038/s41579-018-0136-7
Fahnestock, M. F., Bryce, J. G., McCalley, C. K., Montesdeoca, M., Bai, S., Li, Y., Driscoll, C. T., Crill, P. M., Rich, V. I., & Varner, R. K. (2019). Mercury reallocation in thawing subarctic peatlands. Geochemical Perspectives Letters, 11, 33–38. https://doi.org/10.7185/geochemlet.1922
Martinez, M. A., Woodcroft, B. J., Ignacio Espinoza, J. C., Zayed, A. A., Singleton, C. M., Boyd, J. A., Li, Y.-F., Purvine, S., Maughan, H., Hodgkins, S. B., Anderson, D., Sederholm, M., Temperton, B., Bolduc, B., IsoGenie Project Coordinators, Saleska, S. R., Tyson, G. W., & Rich, V. I. (2019). Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov. Systematic and Applied Microbiology, 42(1), 54–66. https://doi.org/10.1016/j.syapm.2018.12.003
Priyam, A., Woodcroft, B. J., Rai, V., Moghul, I., Munagala, A., Ter, F., Chowdhary, H., Pieniak, I., Maynard, L. J., Gibbins, M. A., Moon, H., Davis-Richardson, A., Uludag, M., Watson-Haigh, N. S., Challis, R., Nakamura, H., Favreau, E., Gómez, E. A., Pluskal, T., Leonard, G., Rumpf, W., & Wurm, Y. (2019). Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases. Molecular Biology and Evolution, 36(12), 2922–2924. https://doi.org/10.1093/molbev/msz185
Roux, S., Trubl, G., Goudeau, D., Nath, N., Couradeau, E., Ahlgren, N. A., Zhan, Y., Marsan, D., Chen, F., Fuhrman, J. A., Northen, T. R., Sullivan, M. B., Rich, V. I., Malmstrom, R. R., & Eloe-Fadrosh, E. A. (2019). Optimizing de novo genome assembly from PCR-amplified metagenomes. PeerJ, 7, e6902. https://doi.org/10.7717/peerj.6902
Tfaily, M. M., Wilson, R. M., Brewer, H. M., Chu, R. K., Heyman, H. M., Hoyt, D. W., Kyle, J. E., & Purvine, S. O. (2019). Single-throughput complementary high-resolution analytical techniques for characterizing complex natural organic matter mixtures. Journal of Visualized Experiments, (143). https://doi.org/10.3791/59035
Trubl, G., Roux, S., Solonenko, N., Li, Y.-F., Bolduc, B., Rodríguez-Ramos, J., Eloe-Fadrosh, E. A., Rich, V. I., & Sullivan, M. B. (2019). Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils. PeerJ, 7, e7265. https://doi.org/10.7717/peerj.7265
Wilson, R. M., Neumann, R. B., Crossen, K. B., Raab, N. M., Hodgkins, S. B., Saleska, S. R., Bolduc, B., Woodcroft, B. J., Tyson, G. W., Chanton, J. P., & Rich, V. I. (2019). Microbial community analyses inform geochemical reaction network models for predicting pathways of greenhouse gas production. Frontiers in Earth Science, 7, 59. https://doi.org/10.3389/feart.2019.00059

2018

Boyd, J. A., Woodcroft, B. J., & Tyson, G. W. (2018). GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes. Nucleic Acids Research, 46(10), e59. https://doi.org/10.1093/nar/gky174
Emerson, J. B., Roux, S., Brum, J. R., Bolduc, B., Woodcroft, B. J., Jang, H. B., Singleton, C. M., Solden, L. M., Naas, A. E., Boyd, J. A., Hodgkins, S. B., Wilson, R. M., Trubl, G., Li, C., Frolking, S., Pope, P. B., Wrighton, K. C., Crill, P. M., Chanton, J. P., Saleska, S. R., Tyson, G. W., Rich, V. I., & Sullivan, M. B. (2018). Host-linked soil viral ecology along a permafrost thaw gradient. Nature Microbiology, 3(8), 870–880. https://doi.org/10.1038/s41564-018-0190-y
Hodgkins, S. B., Richardson, C. J., Dommain, R., Wang, H., Glaser, P. H., Verbeke, B., Winkler, B. R., Cobb, A. R., Rich, V. I., Missilmani, M., Flanagan, N., Ho, M., Hoyt, A. M., Harvey, C. F., Vining, S. R., Hough, M. A., Moore, T. R., Richard, P. J. H., De La Cruz, F. B., Toufaily, J., Hamdan, R., Cooper, W. T., & Chanton, J. P. (2018). Tropical peatland carbon storage linked to global latitudinal trends in peat recalcitrance. Nature Communications, 9(1), 3640. https://doi.org/10.1038/s41467-018-06050-2
Singleton, C. M., McCalley, C. K., Woodcroft, B. J., Boyd, J. A., Evans, P. N., Hodgkins, S. B., Chanton, J. P., Frolking, S., Crill, P. M., Saleska, S. R., Rich, V. I., & Tyson, G. W. (2018). Methanotrophy across a natural permafrost thaw environment. The ISME Journal, 12, 2544–2558. https://doi.org/10.1038/s41396-018-0065-5
Trubl, G., Jang, H. B., Roux, S., Emerson, J. B., Solonenko, N., Vik, D. R., Solden, L., Ellenbogen, J., Runyon, A. T., Bolduc, B., Woodcroft, B. J., Saleska, S. R., Tyson, G. W., Wrighton, K. C., Sullivan, M. B., & Rich, V. I. (2018). Soil viruses are underexplored players in ecosystem carbon processing. MSystems, 3(5), e00076-18. https://doi.org/10.1128/mSystems.00076-18
Walter Anthony, K., Schneider von Deimling, T., Nitze, I., Frolking, S., Emond, A., Daanen, R., Anthony, P., Lindgren, P., Jones, B., & Grosse, G. (2018). 21st-century modeled permafrost carbon emissions accelerated by abrupt thaw beneath lakes. Nature Communications, 9(1), 3262. https://doi.org/10.1038/s41467-018-05738-9
Wik, M., Johnson, J. E., Crill, P. M., DeStasio, J. P., Erickson, L., Halloran, M. J., Fahnestock, M. F., Crawford, M. K., Phillips, S. C., & Varner, R. K. (2018). Sediment characteristics and methane ebullition in three subarctic lakes. Journal of Geophysical Research: Biogeosciences, 123(8), 2399–2411. https://doi.org/10.1029/2017JG004298
Wilson, R. M., & Tfaily, M. M. (2018). Advanced molecular techniques provide new rigorous tools for characterizing organic matter quality in complex systems. Journal of Geophysical Research: Biogeosciences, 123(6), 1790–1795. https://doi.org/10.1029/2018JG004525
Woodcroft, B. J., Singleton, C. M., Boyd, J. A., Evans, P. N., Emerson, J. B., Zayed, A. A. F., Hoelzle, R. D., Lamberton, T. O., McCalley, C. K., Hodgkins, S. B., Wilson, R. M., Purvine, S. O., Nicora, C. D., Li, C., Frolking, S., Chanton, J. P., Crill, P. M., Saleska, S. R., Rich, V. I., & Tyson, G. W. (2018). Genome-centric view of carbon processing in thawing permafrost. Nature, 560(7716), 49–54. https://doi.org/10.1038/s41586-018-0338-1

2017

Bolduc, B., Youens-Clark, K., Roux, S., Hurwitz, B. L., & Sullivan, M. B. (2017). iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure. The ISME Journal, 11(1), 7–14. https://doi.org/10.1038/ismej.2016.89
Bolduc, B., Jang, H. B., Doulcier, G., You, Z.-Q., Roux, S., & Sullivan, M. B. (2017). vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria. PeerJ, 5, e3243. https://doi.org/10.7717/peerj.3243
Deng, J., McCalley, C. K., Frolking, S., Chanton, J., Crill, P., Varner, R., Tyson, G., Rich, V., Hines, M., Saleska, S. R., & Li, C. (2017). Adding stable carbon isotopes improves model representation of the role of microbial communities in peatland methane cycling. Journal of Advances in Modeling Earth Systems, 9(2), 1412–1430. https://doi.org/10.1002/2016MS000817
Martinez-Hernandez, F., Fornas, O., Lluesma Gomez, M., Bolduc, B., de la Cruz Peña, M. J., Martínez, J. M., Anton, J., Gasol, J. M., Rosselli, R., Rodriguez-Valera, F., Sullivan, M. B., Acinas, S. G., & Martinez-Garcia, M. (2017). Single-virus genomics reveals hidden cosmopolitan and abundant viruses. Nature Communications, 8(1), 15892. https://doi.org/10.1038/ncomms15892
Mondav, R., McCalley, C. K., Hodgkins, S. B., Frolking, S., Saleska, S. R., Rich, V. I., Chanton, J. P., & Crill, P. M. (2017). Microbial network, phylogenetic diversity and community membership in the active layer across a permafrost thaw gradient. Environmental Microbiology, 19(8), 3201–3218. https://doi.org/10.1111/1462-2920.13809
Parks, D. H., Rinke, C., Chuvochina, M., Chaumeil, P.-A., Woodcroft, B. J., Evans, P. N., Hugenholtz, P., & Tyson, G. W. (2017). Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. Nature Microbiology, 2(11), 1533–1542. https://doi.org/10.1038/s41564-017-0012-7
Roux, S., Emerson, J. B., Eloe-Fadrosh, E. A., & Sullivan, M. B. (2017). Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity. PeerJ, 5, e3817. https://doi.org/10.7717/peerj.3817
Vining, S. R. (2017). Shifts in Arctic vegetation may fuel feedbacks to climate change in peatland regions (Honors Thesis). The University of Arizona, Tucson, AZ. Retrieved from https://hdl.handle.net/10150/625232
Wilson, R. M., Fitzhugh, L., Whiting, G. J., Frolking, S., Harrison, M. D., Dimova, N., Burnett, W. C., & Chanton, J. P. (2017). Greenhouse gas balance over thaw-freeze cycles in discontinuous zone permafrost. Journal of Geophysical Research: Biogeosciences, 122(2), 387–404. https://doi.org/10.1002/2016JG003600
Wilson, Rachel M., Tfaily, M. M., Rich, V. I., Keller, J. K., Bridgham, S. D., Zalman, C. M., Meredith, L., Hanson, P. J., Hines, M., Pfeifer-Meister, L., Saleska, S. R., Crill, P., Cooper, W. T., Chanton, J. P., & Kostka, J. E. (2017). Hydrogenation of organic matter as a terminal electron sink sustains high CO₂:CH₄ production ratios during anaerobic decomposition. Organic Geochemistry, 112, 22–32. https://doi.org/10.1016/j.orggeochem.2017.06.011

2016

Anthony, K. W., Daanen, R., Anthony, P., Schneider von Deimling, T., Ping, C.-L., Chanton, J. P., & Grosse, G. (2016). Methane emissions proportional to permafrost carbon thawed in Arctic lakes since the 1950s. Nature Geoscience, 9(9), 679–682. https://doi.org/10.1038/ngeo2795
Hodgkins, S. B. (2016). Changes in organic matter chemistry and methanogenesis due to permafrost thaw in a subarctic peatland (Dissertation). The Florida State University, Tallahassee, FL. Retrieved from https://purl.flvc.org/fsu/fd/FSU_2016SP_Hodgkins_fsu_0071E_13057
Hodgkins, S. B., Tfaily, M. M., Podgorski, D. C., McCalley, C. K., Saleska, S. R., Crill, P. M., Rich, V. I., Chanton, J. P., & Cooper, W. T. (2016). Elemental composition and optical properties reveal changes in dissolved organic matter along a permafrost thaw chronosequence in a subarctic peatland. Geochimica et Cosmochimica Acta, 187, 123–140. https://doi.org/10.1016/j.gca.2016.05.015
Mackelprang, R., Saleska, S. R., Jacobsen, C. S., Jansson, J. K., & Taş, N. (2016). Permafrost meta-omics and climate change. Annual Review of Earth and Planetary Sciences, 44(1), 439–462. https://doi.org/10.1146/annurev-earth-060614-105126
Rinke, C., Low, S., Woodcroft, B. J., Raina, J.-B., Skarshewski, A., Le, X. H., Butler, M. K., Stocker, R., Seymour, J., Tyson, G. W., & Hugenholtz, P. (2016). Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics. PeerJ, 4, e2486. https://doi.org/10.7717/peerj.2486
Trubl, G., Solonenko, N., Chittick, L., Solonenko, S. A., Rich, V. I., & Sullivan, M. B. (2016). Optimization of viral resuspension methods for carbon-rich soils along a permafrost thaw gradient. PeerJ, 4, e1999. https://doi.org/10.7717/peerj.1999
Woodcroft, B. J., Boyd, J. A., & Tyson, G. W. (2016). OrfM: a fast open reading frame predictor for metagenomic data. Bioinformatics, 32(17), 2702–2703. https://doi.org/10.1093/bioinformatics/btw241

2015

Deng, J., Li, C., & Frolking, S. (2015). Modeling impacts of changes in temperature and water table on C gas fluxes in an Alaskan peatland: Modeling C Gas Fluxes in Peatland. Journal of Geophysical Research: Biogeosciences, 120(7), 1279–1295. https://doi.org/10.1002/2014JG002880
Hodgkins, S. B., Chanton, J. P., Langford, L. C., McCalley, C. K., Saleska, S. R., Rich, V. I., Crill, P. M., & Cooper, W. T. (2015). Soil incubations reproduce field methane dynamics in a subarctic wetland. Biogeochemistry, 126(1), 241–249. https://doi.org/10.1007/s10533-015-0142-z
Kao-Kniffin, J., Woodcroft, B. J., Carver, S. M., Bockheim, J. G., Handelsman, J., Tyson, G. W., Hinkel, K. M., & Mueller, C. W. (2015). Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska. Scientific Reports, 5(1), 18165. https://doi.org/10.1038/srep18165
Tfaily, M. M., Corbett, J. E., Wilson, R., Chanton, J. P., Glaser, P. H., Cawley, K. M., Jaffé, R., & Cooper, W. T. (2015). Utilization of PARAFAC-modeled excitation-emission matrix (EEM) fluorescence spectroscopy to identify biogeochemical processing of dissolved organic matter in a Northern peatland. Photochemistry and Photobiology, 91(3), 684–695. https://doi.org/10.1111/php.12448

2014

Anthony, K. M. W., Zimov, S. A., Grosse, G., Jones, M. C., Anthony, P. M., Iii, F. S. C., Finlay, J. C., Mack, M. C., Davydov, S., Frenzel, P., & Frolking, S. (2014). A shift of thermokarst lakes from carbon sources to sinks during the Holocene epoch. Nature, 511(7510), 452–456. https://doi.org/10.1038/nature13560
Deng, J., Li, C., Frolking, S., Zhang, Y., Bäckstrand, K., & Crill, P. (2014). Assessing effects of permafrost thaw on C fluxes based on multiyear modeling across a permafrost thaw gradient at Stordalen, Sweden. Biogeosciences, 11(17), 4753–4770. https://doi.org/10.5194/bg-11-4753-2014
Frolking, S., Talbot, J., & Subin, Z. M. (2014). Exploring the relationship between peatland net carbon balance and apparent carbon accumulation rate at century to millennial time scales. The Holocene, 24(9), 1167–1173. https://doi.org/10.1177/0959683614538078
Hodgkins, S. B., Tfaily, M. M., McCalley, C. K., Logan, T. A., Crill, P. M., Saleska, S. R., Rich, V. I., & Chanton, J. P. (2014). Changes in peat chemistry associated with permafrost thaw increase greenhouse gas production. Proceedings of the National Academy of Sciences of the United States of America, 111(16), 5819–5824. https://doi.org/10.1073/pnas.1314641111
McCalley, C. K., Woodcroft, B. J., Hodgkins, S. B., Wehr, R. A., Kim, E.-H., Mondav, R., Crill, P. M., Chanton, J. P., Rich, V. I., Tyson, G. W., & Saleska, S. R. (2014). Methane dynamics regulated by microbial community response to permafrost thaw. Nature, 514(7523), 478–481. https://doi.org/10.1038/nature13798
Mondav, R., Woodcroft, B. J., Kim, E.-H., McCalley, C. K., Hodgkins, S. B., Crill, P. M., Chanton, J., Hurst, G. B., VerBerkmoes, N. C., Saleska, S. R., Hugenholtz, P., Rich, V. I., & Tyson, G. W. (2014). Discovery of a novel methanogen prevalent in thawing permafrost. Nature Communications, 5, 3212. https://doi.org/10.1038/ncomms4212

Non-IsoGenie Publications on Stordalen Mire and Other IsoGenie-Related Topics

2020

Thanh Duc, N., Silverstein, S., Wik, M., Crill, P., Bastviken, D., & Varner, R. K. (2020). Technical note: Greenhouse gas flux studies: an automated online system for gas emission measurements in aquatic environments. Hydrology and Earth System Sciences, 24(7), 3417–3430. https://doi.org/10.5194/hess-24-3417-2020

2018

Gålfalk, M., M. Karlson, P. Crill, P. Bousquet and D. Bastviken (2018). Technical note: A simple approach for efficient collection of field reference data for calibrating remote sensing mapping of northern wetlands. Biogeosciences. https://doi.org/10.5194/bg-2017-445

2017

Fisher, R.E., J.L. France, D. Lowry, M. Lanoisellé, R. Brownlow, J.A. Pyle, M. Cain, N. Warwick, U.M. Skiba, J. Drewer, K.J. Dinsmore, S.R. Leeson, S. J.-B. Bauguitte, A. Wellpott, S.J. O’Shea, G. Allen, M.W. Gallagher, J. Pitt, C.J. Percival, K. Bower, C. George, G.D. Hayman, T. Aalto, A. Lohila, M. Aurela, T. Laurila, P.M. Crill, C.K. McCalley and E.G. Nisbet (2017). Measurement of the 13C isotopic signature of methane emissions from northern European wetlands. Global Biogeochemical Cycles, 31. Adv. Modeling Earth Sys. https://doi.org/10.1002/2016GB005504
Gałka, M., Szal, M., Watson, E. J., Gallego-Sala, A., Amesbury, M. J., Charman, D. J., Roland, T. P., Edward Turner, T., and Swindles, G. T. (2017) Vegetation Succession, Carbon Accumulation and Hydrological Change in Subarctic Peatlands, Abisko, Northern Sweden. Permafrost and Periglac. Process. https://doi.org/10.1002/ppp.1945
Howard-Varona. C., Roux, S., Dore, H., Solonenko, N., Holmfeldt, K., Markillie, L.M., Orr, G., & Sullivan, M.B. (2017). Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus. ISMEJ, 11, 284-295. https://doi.org/10.1038/ismej.2016.81
Jammet, M., S. Dengel, E. Kettner, F-J W. Parmentier, M. Wik, P. Crill, and T. Friborg (2017). Year-round CH4 and CO2 flux dynamics in two contrasting freshwater ecosystems of the subarctic. Biogeosciences. https://doi.org/10.5194/bg-14-5189-2017
Keuper, F., E. Dorrepaal, P.M. van Bodegom, R. van Logtestijn, G. Venhuizen, J. van Hal and R. Aerts (2017). Experimentally increased nutrient availability at the permafrost thaw front selectively enhances biomass production of deep-rooting subarctic peatland species. Global Change Biology. https://doi.org/10.1111/gcb.13804
Krüger, J. P., Conen, F., Leifeld, J., and Alewell, C. (2017) Palsa Uplift Identified by Stable Isotope Depth Profiles and Relation of δ15N to C/N Ratio. Permafrost and Periglac. Process., 28: 485–492. https://doi.org/10.1002/ppp.1936
Normand, A. E., A. N. Smith, M. W. Clark, J. R. Long, and K. R. Reddy (2017). Chemical Composition of Soil Organic Matter in a Subarctic Peatland: Influence of Shifting Vegetation Communities. Soil Sci. Soc. Am. J. 81:41-49. https://doi.org/10.2136/sssaj2016.05.0148
Saunois, M, P. Bousquet, and others (2017). Variability and quasi-decadal changes in the methane budget over the period 2000-2012. Atmos. Phys. Chem. 17: 11135-11161. https://doi.org/10.5194/acp-2017-296

2016

Paez-Espino, D., Chen, I-M A., Palaniappan, K., Ratner, A., Chu, K., Szeto, E., Pillay, M., Huang, J., Markowitz, V.M., Nielsen, T., Huntemann, M., Reddy, T.B.K., Pavlopoulos, G.A., Sullivan, M.B., Campbell, B.J., Chen, F., McMahon, K., Hallam, S.J., Denef, V., Cavicchioli, R., Caffrey, S.M., Streit, W.R., Webster, J., Handley, K., Salekdeh, G.H., Tsesmetzis, N., Setubal, J.C., PopeP.B., Liu, W-T., Rivers, A.R., Ivanova, N.N. & Kyrpides, N.C. (2016). IMG/VR: A database of cultured and uncultured DNA Viruses 1 and Retroviruses. Nucleic Acids Research, 45, D457-D465.

2015

Tang, J., Miller, P. A., Crill, P. M., Olin, S., & Pilesjö, P. (2015). Investigating the influence of two different flow routing algorithms on soil-water-vegetation interactions using the dynamic ecosystem model LPJ-GUESS. Ecohydrology, 8(4), 570-583. doi: 10.1002/eco.1526
Thornton, B. F., Wik, M., & Crill, P. M. (2015). Climate-forced changes in available energy and methane bubbling from subarctic lakes. Geophys. Res. Lett., 42, 1936–1942. doi: 10.1002/2015GL063189.
Waddington, J. M., Morris, P. J., Kettridge, N., Granath, G., Thompson, D. K., & Moore, P. A. (2015). Hydrological feedbacks in northern peatlands. Ecohydrology, 8(1), 113–127. doi: 10.1002/eco.1493

2014

Walter Anthony, K. M., Zimov, S. A., Grosse, G., Jones, M. C., Anthony, P. M., Chapin III, F. S., Finlay, J. C., Mack, M. C., Davydod, S., Frenzel, P., & Frolking, S. (2014). A shift of thermokarst lakes from carbon sources to sinks during the Holocene epoch. Nature, 511, 452-456. doi:10.1038/nature13560

2013

Olefeldt, D., Turetsky, M. R., Crill, P. M., & McGuire, A. D. (2013). Environmental and physical controls on northern terrestrial methane emissions across permafrost zones. Global Change Biology, 19(2), 589-603. doi: 10.1111/gcb.12071

2011

Wik, M., Crill, P. M., Bastviken, D., Danielsson, Å., & Norbäck, E. (2011). Bubbles trapped in arctic lake ice: Potential implications for methane emissions, J. Geophys. Res., 116, G03044. doi: 10.1029/2011JG001761.
Thornton, B. F., Wik, M., & Crill, P. M. (2015), Climate-forced changes in available energy and methane bubbling from subarctic lakes. Geophys. Res. Lett., 42, 1936–1942. doi: 10.1002/2015GL063189.

2010

Jackowicz-Korczyński, M., Christensen, T. R., Bäckstrand, K., Crill, P., Friborg, T., Mastepanov, M., & Ström, L. (2010). Annual cycle of methane emission from a subarctic peatland, J. Geophys. Res., 115, G02009. doi: 10.1029/2008JG000913.
Bäckstrand, K., Crill, P.M., Jackowicz-Korczyński, M., Mastepanov, M., Christensen, T. R., & Bastviken, D. (2010). Annual carbon gas budget for a subarctic peatland, Northern Sweden. Biogeosciences, 7, 95-108.

2008

Bäckstrand, K., Crill, P. M., Mastepanov, M., Christensen, T. R., & Bastviken, D. (2008). Total hydrocarbon flux dynamics at a subarctic mire in northern Sweden, J. Geophys. Res., 113, G03026. doi: 10.1029/2008JG000703.

2006

Johansson, T., Malmer, N., Crill, P. M., Friborg T., Åkerman, J. H., Mastepanov, M., & Christensen, T. R. (2006). Decadal vegetation changes in a northern peatland, greenhouse gas fluxes and net radiative forcing. Global Change Biology, 12: 2352–2369. doi: 10.1111/j.1365-2486.2006.01267.x

2005

Malmer, N., Johansson, T., Olsrud, M., & Christensen, T. R. (2005). Vegetation, climatic changes and net carbon sequestration in a North-Scandinavian subarctic mire over 30 years. Global Change Biology, 11: 1895–1909. doi: 10.1111/j.1365-2486.2005.01042.x

2004

Dorrepaal, E., Aerts, R., Cornelissen, J. C., Callaghan, T. V., & Van Logtestijn, R. P. (2004). Summer warming and increased winter snow cover affect Sphagnum fuscum growth, structure and production in a sub-arctic bog. Global Change Biology, 10(1), 93-104. doi:10.1111/j.1365-2486.2003.00718.x
Aerts, R., Cornelissen, J. C., Dorrepaal, E., van Logtestijn, R. P., & Callaghan, T. V. (2004). Effects of experimentally imposed climate scenarios on flowering phenology and flower production of subarctic bog species. Global Change Biology, 10(9), 1599-1609. doi:10.1111/j.1365-2486.2004.00815.x

1999

Svensson, B. H., Christensen, T. R., Johansson, E., & Öquist, M. (1999). Interdecadal changes in CO 2 and CH 4 fluxes of a subarctic mire: Stordalen revisited after 20 years. Oikos, 84(1), 22-30.

1984

Svensson, B.H. &Rosswall;, T. (1984). In situ methane production from acid peat in plant communities with different moisture regimes in a subarctic mire. Oikos, 43(3), 341-350.

1980

Svensson, B. H. (1980). Carbon dioxide and methane fluxes from the ombrotrophic parts of a subarctic mire. Ecological Bulletins, 30, 235-250.
Svensson, B. H. & Rosswall, T. (1980). Energy flow through the subarctic mire at Stordalen. Ecological Bulletins, 30, 283-307.